All Applications



The NIH 3D Print Exchange provides models in formats that are readily compatible with 3D printers and offers a set of tools to create and share 3D-printable models.


Nephele allows researchers to analyze, transfer, and store microbiome data through the use of cloud-based resources.


ChemokineDB is an amalgamation of chemokine and chemokine receptor taxonomy, nomenclature, structure, function, tissue information, and phenotype.


The PapillomaVirus Episteme (PaVE) provides curated genomics information and tools, supporting the storage, annotation, analysis, and exchange of information.


The TB Portals contain integrated clinical, imaging, and bacterial genomic information from TB patient cases around the world.


The Database of Antimicrobial Activity and Structure of Peptides (DBAASP) provides information and analytical resources to researchers to accelerate the development of antimicrobial compounds.


OMics Compendia Commons (OMiCC) is a community-based, biologist-friendly web platform for creating and (meta-) analyzing annotated gene-expression data compendia.


The Simplified Presentation of Incredibly Complex Evaluations (SPICE) program is a data mining application that analyzes large FLOWJO data sets from polychromatic flow cytometry.


CARD is a comprehensive web-application for integrated analysis and interactive visualization of RNA interference (RNAi) screening data.


SPADE is a web tool for applying statistical analysis of gene expression data and visualizing the results.


The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) platform is designed to facilitate prediction, analysis, and hypothesis generation from genome-wide perturbation studies.


MAD BEE is a mAdb microarray data management and analysis system.


ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. 


Phasespace Explorer provides a computational framework for understanding behaviors of dynamical models by combining machine learning techniques and massive computational simulation.


PATRIC provides integrated data and analysis tools to support biomedical research on bacterial infectious diseases.


The Virus Pathogen Resource (ViPR) is a database and analysis resource that supports the research of viral pathogens in the NIAID Category A-C Priority Pathogen lists and those causing (re)emerging infectious diseases.


VectorBase provides genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens.


The EuPathDB provides a portal for accessing genomic-scale datasets associated with the diverse eukaryotic microbes.


The Influenza Research Database (IRD) provides a diverse set of integrated data sets (both publicly available and computed), and novel bioinformatics tools for analysis and visualization of data sets.


Metascape comprises a set of reliable, productive and intuitive tools that help biomedical research community to analysis gene/protein lists and make better data-driven decisions.


This site explores the heterogeniety of human immune cells through figures and a data browser.


ImmPort provides advanced information technology support in the archiving and exchange of scientific data for the diverse community of life science researchers.


Three statistical tools designed to estimate titer levels from neutralization assays, compute Student’s T-tests from summarized data or compute contingency table analyses for 2 x 2 tables.


Simmune is designed to easily define the interactions between individual molecules in a large network or the behaviors of cells in response to external signals. It consists of three components: Modeler, Cell Designer and Simulator.


The Neutralization Epitope Prediction (NEP) method predicts antibody-specific epitopes at the residue level based on neutralization panels of diverse viral strains (the antigen), incorporating information from an unbound structure.


The Networks on Circular Chromosome (NetCirChro) plugin enables users of the network visualization platform Cytoscape to overlay networks onto a circular chromosomal map. Data selection is synchronized between Cytoscape and NetCirChro.


Three-dimensional reconstruction via stereoscopy for the study of mosquito swarms


The Hemagglutinin Structure Prediction (HASP) server allows one to visualize phylogenetic, biochemical, and immunological hemagglutinin data in the three-dimensional context of high quality homology models.


The N-linked Glycosylation Prediction Server aims to discriminate between glycosylated and non-glycosylated N-X-(T/S) sequons byt incorporating structural information and patterns.


This site contains transcriptomes of vector arthropods and non-vector, medically important arthropods and snakes.


This website contains links to scripts and programs associated with the MTB Network Portal, part of the larger Omics4TB consortium.

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Three-dimensional reconstruction via stereoscopy for the study of mosquito swarms


CARD is a comprehensive web-application for integrated analysis and interactive visualization of RNA interference (RNAi) screening data.


ChemokineDB is an amalgamation of chemokine and chemokine receptor taxonomy, nomenclature, structure, function, tissue information, and phenotype.


The Database of Antimicrobial Activity and Structure of Peptides (DBAASP) provides information and analytical resources to researchers to accelerate the development of antimicrobial compounds.


The EuPathDB provides a portal for accessing genomic-scale datasets associated with the diverse eukaryotic microbes.


The Hemagglutinin Structure Prediction (HASP) server allows one to visualize phylogenetic, biochemical, and immunological hemagglutinin data in the three-dimensional context of high quality homology models.


This site explores the heterogeniety of human immune cells through figures and a data browser.


The Influenza Research Database (IRD) provides a diverse set of integrated data sets (both publicly available and computed), and novel bioinformatics tools for analysis and visualization of data sets.


ImmPort provides advanced information technology support in the archiving and exchange of scientific data for the diverse community of life science researchers.


Three statistical tools designed to estimate titer levels from neutralization assays, compute Student’s T-tests from summarized data or compute contingency table analyses for 2 x 2 tables.


MAD BEE is a mAdb microarray data management and analysis system.


This website contains links to scripts and programs associated with the MTB Network Portal, part of the larger Omics4TB consortium.


Metascape comprises a set of reliable, productive and intuitive tools that help biomedical research community to analysis gene/protein lists and make better data-driven decisions.


The Neutralization Epitope Prediction (NEP) method predicts antibody-specific epitopes at the residue level based on neutralization panels of diverse viral strains (the antigen), incorporating information from an unbound structure.


The N-linked Glycosylation Prediction Server aims to discriminate between glycosylated and non-glycosylated N-X-(T/S) sequons byt incorporating structural information and patterns.


The NIH 3D Print Exchange provides models in formats that are readily compatible with 3D printers and offers a set of tools to create and share 3D-printable models.


Nephele allows researchers to analyze, transfer, and store microbiome data through the use of cloud-based resources.


The Networks on Circular Chromosome (NetCirChro) plugin enables users of the network visualization platform Cytoscape to overlay networks onto a circular chromosomal map. Data selection is synchronized between Cytoscape and NetCirChro.


OMics Compendia Commons (OMiCC) is a community-based, biologist-friendly web platform for creating and (meta-) analyzing annotated gene-expression data compendia.


PATRIC provides integrated data and analysis tools to support biomedical research on bacterial infectious diseases.


The PapillomaVirus Episteme (PaVE) provides curated genomics information and tools, supporting the storage, annotation, analysis, and exchange of information.


Phasespace Explorer provides a computational framework for understanding behaviors of dynamical models by combining machine learning techniques and massive computational simulation.


SPADE is a web tool for applying statistical analysis of gene expression data and visualizing the results.


The Simplified Presentation of Incredibly Complex Evaluations (SPICE) program is a data mining application that analyzes large FLOWJO data sets from polychromatic flow cytometry.


Simmune is designed to easily define the interactions between individual molecules in a large network or the behaviors of cells in response to external signals. It consists of three components: Modeler, Cell Designer and Simulator.


ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. 


The TB Portals contain integrated clinical, imaging, and bacterial genomic information from TB patient cases around the world.


The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) platform is designed to facilitate prediction, analysis, and hypothesis generation from genome-wide perturbation studies.


This site contains transcriptomes of vector arthropods and non-vector, medically important arthropods and snakes.


VectorBase provides genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens.


The Virus Pathogen Resource (ViPR) is a database and analysis resource that supports the research of viral pathogens in the NIAID Category A-C Priority Pathogen lists and those causing (re)emerging infectious diseases.


Biological Imaging



The TB Portals contain integrated clinical, imaging, and bacterial genomic information from TB patient cases around the world.


Structural Biology



The NIH 3D Print Exchange provides models in formats that are readily compatible with 3D printers and offers a set of tools to create and share 3D-printable models.


ChemokineDB is an amalgamation of chemokine and chemokine receptor taxonomy, nomenclature, structure, function, tissue information, and phenotype.


The Database of Antimicrobial Activity and Structure of Peptides (DBAASP) provides information and analytical resources to researchers to accelerate the development of antimicrobial compounds.


The Neutralization Epitope Prediction (NEP) method predicts antibody-specific epitopes at the residue level based on neutralization panels of diverse viral strains (the antigen), incorporating information from an unbound structure.


The Hemagglutinin Structure Prediction (HASP) server allows one to visualize phylogenetic, biochemical, and immunological hemagglutinin data in the three-dimensional context of high quality homology models.


The N-linked Glycosylation Prediction Server aims to discriminate between glycosylated and non-glycosylated N-X-(T/S) sequons byt incorporating structural information and patterns.


Genomics



Nephele allows researchers to analyze, transfer, and store microbiome data through the use of cloud-based resources.


The PapillomaVirus Episteme (PaVE) provides curated genomics information and tools, supporting the storage, annotation, analysis, and exchange of information.


The TB Portals contain integrated clinical, imaging, and bacterial genomic information from TB patient cases around the world.


OMics Compendia Commons (OMiCC) is a community-based, biologist-friendly web platform for creating and (meta-) analyzing annotated gene-expression data compendia.


CARD is a comprehensive web-application for integrated analysis and interactive visualization of RNA interference (RNAi) screening data.


SPADE is a web tool for applying statistical analysis of gene expression data and visualizing the results.


The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) platform is designed to facilitate prediction, analysis, and hypothesis generation from genome-wide perturbation studies.


MAD BEE is a mAdb microarray data management and analysis system.


PATRIC provides integrated data and analysis tools to support biomedical research on bacterial infectious diseases.


The Virus Pathogen Resource (ViPR) is a database and analysis resource that supports the research of viral pathogens in the NIAID Category A-C Priority Pathogen lists and those causing (re)emerging infectious diseases.


VectorBase provides genomic, phenotypic and population-centric data to the scientific community for invertebrate vectors of human pathogens.


The EuPathDB provides a portal for accessing genomic-scale datasets associated with the diverse eukaryotic microbes.


The Influenza Research Database (IRD) provides a diverse set of integrated data sets (both publicly available and computed), and novel bioinformatics tools for analysis and visualization of data sets.


Metascape comprises a set of reliable, productive and intuitive tools that help biomedical research community to analysis gene/protein lists and make better data-driven decisions.


Microbiome



Nephele allows researchers to analyze, transfer, and store microbiome data through the use of cloud-based resources.


Biostatistics



The TB Portals contain integrated clinical, imaging, and bacterial genomic information from TB patient cases around the world.


The Simplified Presentation of Incredibly Complex Evaluations (SPICE) program is a data mining application that analyzes large FLOWJO data sets from polychromatic flow cytometry.


SPADE is a web tool for applying statistical analysis of gene expression data and visualizing the results.


The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) platform is designed to facilitate prediction, analysis, and hypothesis generation from genome-wide perturbation studies.


Three statistical tools designed to estimate titer levels from neutralization assays, compute Student’s T-tests from summarized data or compute contingency table analyses for 2 x 2 tables.


Simmune is designed to easily define the interactions between individual molecules in a large network or the behaviors of cells in response to external signals. It consists of three components: Modeler, Cell Designer and Simulator.


Flow Cytometry



The Simplified Presentation of Incredibly Complex Evaluations (SPICE) program is a data mining application that analyzes large FLOWJO data sets from polychromatic flow cytometry.


Pathway Analysis



Simmune is designed to easily define the interactions between individual molecules in a large network or the behaviors of cells in response to external signals. It consists of three components: Modeler, Cell Designer and Simulator.


The Networks on Circular Chromosome (NetCirChro) plugin enables users of the network visualization platform Cytoscape to overlay networks onto a circular chromosomal map. Data selection is synchronized between Cytoscape and NetCirChro.


This website contains links to scripts and programs associated with the MTB Network Portal, part of the larger Omics4TB consortium.


Sequence Analysis



Proteomics Analysis



This site explores the heterogeniety of human immune cells through figures and a data browser.