Phylogenetics training of fours seminars - from start to finish - with slides, shell scripts, and data files
4 zip files
0 PDF
phylogenetics
Molecular Evolutionary Analysis of Pathogens using BEAST
phylogenetics
Tree Building 2: Maximum Likelihood, Bayesian Analysis, and Making Tree Figures
phylogenetics
Tree Building 1: Neighbor Joining, Parsimony, and Bootstrapping
phylogenetics
Introduction, Seq. Similarity, and BLAST introduces sequence similarity, the BLAST alignment software, and background of why similarity is used.
phylogenetics
Survey of molecular and population mechanisms creating and maintaining genetic diversity.
phylogenetics
Mechanisms of Evolution including mutations, chromosomal variations and genomic variations
phylogenetics
Viral Sequence Alignment and Phylogenetics Seminar
phylogenetics
Introduction to the BEAST software for Bayesian phylogenetic analysis.
phylogenetics
Introduction to Bayesian methods for inferring changes in population size over time form genomic data.
phylogenetics
How to use location data for Bayesian phylodynamic analysis
phylogenetics
Sequence assembly including starting with a clean sequence, collecting homologs, alignment and building trees
phylogenetics
Introduction to basic sequence alignment algorithms and their uses.
phylogenetics
Basic protocols for Bayesian phylodynamic analysis of pathogen sequence data.
phylogenetics
Phylogenetic Tree building Parts I & II
phylogenetics
Making Publication-Quality Trees Figures
phylogenetics
Selection Analysis Using HyPhy
phylogenetics
Introduction to the FASTA sequence data file format.
phylogenetics
How to use the ClustalX program to perform multiple sequence alignment.
phylogenetics
Neighbor-joining tree with MEGA5 shorts - including file format conversion, import, and neighbor joining tree calculations
phylogenetics
Phylogenetic Input data File Formats